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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
3
Hi-C
Assay category
60
DNA accessibility
51
Transcription
DNA methylation
3
3D chromatin structure
Date released
93
May, 2022
18
September, 2020
3
October, 2022
Available data
fastq
112
zippedFastqFolder
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
114
Homo sapiens
Biosample type
114
primary cell
Organ
42
epithelium
42
pancreas
Project
114
HPAP
Genome assembly (visualization)
3
hg19
Lab
2714
AMP-T2D consortium
319
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
114
Klaus Kaestner, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
assay_slims!
DNA methylation
files.file_type!
fastq
BIOSAMPLE
ASSAY
114 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
1
pancreatic beta cell
13
1
pancreatic acinar cell
4
1
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