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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
Assay category
43
DNA binding
41
DNA accessibility
6
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
2
February, 2020
Available data
87
bam
71
bed narrowPeak
69
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
Organism
94
Homo sapiens
Biosample type
94
tissue
Organ
893
pancreas
784
liver
673
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
ibed
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
artery
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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