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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
466
DNA binding
193
Transcription
29
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
63
December, 2017
52
November, 2018
40
May, 2022
31
August, 2021
30
August, 2017
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
680
bam
621
bigWig
462
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
698
Homo sapiens
Biosample type
388
cell line
286
tissue
15
in vitro differentiated cells
9
primary cell
Organ
874
pancreas
698
liver
655
connective tissue
477
adipose tissue
464
epithelium
377
heart
kidney
227
vasculature
222
blood vessel
166
brain
159
bone element
135
artery
121
limb
75
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
698
AMP
Genome assembly (visualization)
581
hg19
499
GRCh38
Lab
627
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
tagAlign
organ_slims!
kidney
BIOSAMPLE
ASSAY
698 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
366
14
1
2
2
2
1
tissue
liver
75
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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