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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
13
ATAC-seq
10
total RNA-seq
6
Hi-C
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
24
DNA binding
13
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
8
February, 2021
8
February, 2023
8
July, 2019
7
August, 2017
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bed narrowPeak
67
bigWig
64
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
5
txt
4
bed bed3
2
bedpe bed3+
2
hic
Organism
91
Homo sapiens
Biosample type
78
tissue
13
primary cell
Organ
874
pancreas
698
liver
655
connective tissue
477
adipose tissue
464
epithelium
377
heart
350
kidney
227
vasculature
222
blood vessel
166
brain
159
bone element
135
artery
121
limb
75
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
69
hg19
60
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
files.file_type!
tagAlign
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
91 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
muscle of arm
17
skeletal muscle tissue
7
1
1
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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