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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
61
DNA binding
8
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
39
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
421
bigWig
401
tsv
40
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
470
tissue
2
primary cell
1
in vitro differentiated cells
Organ
820
pancreas
701
liver
642
connective tissue
473
adipose tissue
421
epithelium
343
heart
335
kidney
207
vasculature
203
blood vessel
167
brain
159
bone element
135
artery
106
limb
77
musculature of body
58
blood
58
bodily fluid
57
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
473
AMP
Genome assembly (visualization)
424
hg19
421
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
files.file_type!
tagAlign bed3+
target.investigated_as!
chromatin remodeller
narrow histone mark
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
25
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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