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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
30
DNase-seq
3
Hi-C
1
single cell RNA-seq
Assay category
134
DNA binding
77
DNA accessibility
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
6
October, 2019
4
July, 2019
2
March, 2020
Available data
218
bigWig
205
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
215
Homo sapiens
Biosample type
193
tissue
14
cell line
8
primary cell
Organ
528
liver
482
pancreas
321
epithelium
319
kidney
258
brain
215
heart
199
connective tissue
165
vasculature
160
blood vessel
114
limb
101
bone element
84
adipose tissue
83
artery
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
23
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
215
AMP
Genome assembly (visualization)
190
GRCh38
116
hg19
Lab
175
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
tsv
organ_slims!
musculature of body
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
tissue
coronary artery
5
36
2
heart left ventricle
35
2
3
1
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
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