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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
16
ATAC-seq
4
pCHi-C
3
DNase-seq
2
ChIP-seq
Assay category
19
DNA accessibility
17
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
21
October, 2019
17
February, 2023
3
June, 2019
1
February, 2020
Available data
18
bed narrowPeak
3
bam
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
tsv
Organism
42
Homo sapiens
Biosample type
42
tissue
Organ
809
pancreas
742
liver
633
connective tissue
465
adipose tissue
epithelium
326
heart
273
kidney
214
brain
188
vasculature
183
blood vessel
127
artery
87
limb
71
bone element
69
blood
69
bodily fluid
69
musculature of body
60
eye
33
embryo
27
nerve
20
lung
19
spleen
18
ureter
13
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
18
hg19
3
GRCh38
Lab
42
AMP-T2D consortium
assay_slims!
DNA methylation
files.file_type!
txt
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
42 results
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total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
ChIP-seq
tissue
islet of Langerhans
14
1
4
2
retina
3
15
3
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