Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
Assay category
487
DNA binding
162
Transcription
8
DNA accessibility
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
299
November, 2017
193
May, 2020
60
December, 2017
47
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
657
bam
598
bigWig
439
fastq
418
bed narrowPeak
335
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
csv
1
hdf5
1
vcf
Organism
657
Homo sapiens
Biosample type
345
cell line
286
tissue
14
in vitro differentiated cells
12
primary cell
Organ
685
pancreas
657
liver
589
connective tissue
440
adipose tissue
316
epithelium
243
brain
205
heart
183
vasculature
178
blood vessel
144
kidney
113
limb
102
artery
66
bone element
56
musculature of body
50
blood
50
bodily fluid
42
nerve
36
embryo
22
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
657
AMP
Genome assembly (visualization)
562
hg19
509
GRCh38
Lab
657
AMP-T2D consortium
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
DNA methylation
files.file_type!
csv
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
657 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
cell line
HepG2
339
5
1
tissue
liver
120
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download