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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
6
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
3
August, 2017
3
August, 2021
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
Available data
673
bam
610
bigWig
455
fastq
429
bed narrowPeak
347
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
13
Homo sapiens
Biosample type
6
primary cell
6
tissue
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
connective tissue
27
pancreas
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
0
bodily fluid
Project
13
AMP
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
assay_slims!
DNA methylation
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
tissue
liver
3
2
right lobe of liver
1
cell line
HepG2
1
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