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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
10
DNA accessibility
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
382
November, 2017
300
August, 2017
210
June, 2019
189
October, 2019
141
February, 2023
133
May, 2021
106
August, 2021
97
May, 2019
94
December, 2017
81
November, 2018
74
October, 2018
73
September, 2018
65
April, 2019
62
February, 2021
50
July, 2018
44
April, 2018
44
May, 2022
41
September, 2020
40
May, 2024
39
February, 2018
37
November, 2019
35
December, 2018
30
January, 2019
May, 2020
17
October, 2017
11
September, 2017
7
August, 2020
7
July, 2019
5
January, 2018
4
August, 2018
3
June, 2018
3
March, 2020
2
November, 2020
1
March, 2019
Available data
81
fastq
80
bam
73
bed narrowPeak
73
bigBed narrowPeak
73
bigWig
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
81
Homo sapiens
Biosample type
60
cell line
20
tissue
1
primary cell
Organ
52
liver
15
blood
15
bodily fluid
7
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
81
AMP
Genome assembly (visualization)
72
GRCh38
71
hg19
Lab
81
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
May, 2020
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
GM12878
15
tissue
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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