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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
52
single cell RNA-seq
39
ATAC-seq
21
ChIP-seq
21
snATAC-seq
Assay category
261
DNA accessibility
52
Transcription
DNA methylation
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
93
May, 2022
19
September, 2020
15
August, 2017
9
October, 2019
6
November, 2017
6
November, 2018
1
November, 2020
Available data
2691
bam
2528
bigWig
1420
tsv
1373
bed narrowPeak
872
fastq
681
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
112
zippedFastqFolder
64
xls
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
334
Homo sapiens
Biosample type
173
tissue
159
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
61
epithelium
46
pancreas
38
brain
36
limb
33
musculature of body
30
heart
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
222
AMP
112
HPAP
Genome assembly (visualization)
218
GRCh38
199
hg19
Lab
222
AMP-T2D consortium
112
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA methylation
organ_slims!
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
334 results
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DNase-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
skeletal muscle myoblast
1
13
pancreatic beta cell
13
endothelial cell of umbilical vein
2
2
+ See 20 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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