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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
12
ChIP-seq
3
DNase-seq
1
GRO-seq
Assay category
14
Transcription
12
DNA binding
3
DNA accessibility
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
6
December, 2017
3
June, 2019
2
May, 2021
1
January, 2018
Available data
35
bam
30
bed narrowPeak
30
bigWig
23
fastq
17
tsv
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
Organism
30
Homo sapiens
Biosample type
19
in vitro differentiated cells
8
cell line
3
tissue
Organ
621
liver
619
pancreas
568
connective tissue
423
adipose tissue
epithelium
222
brain
218
heart
154
vasculature
149
blood vessel
131
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
30
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
30
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_slims!
DNA methylation
organ_slims!
epithelium
BIOSAMPLE
ASSAY
30 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
12
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
retina
3
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