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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
Assay category
133
DNA binding
65
Transcription
26
DNA accessibility
DNA methylation
Target of assay
104
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
16
November, 2018
15
February, 2018
9
August, 2017
8
January, 2019
8
July, 2018
6
October, 2017
4
December, 2017
1
June, 2018
Available data
222
fastq
206
bam
156
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
41
tsv
6
txt
2
bed bed3+
2
zippedFastqFolder
Organism
224
Homo sapiens
Biosample type
88
cell line
77
tissue
44
primary cell
15
in vitro differentiated cells
Organ
75
pancreas
48
liver
45
blood
45
bodily fluid
34
epithelium
23
adipose tissue
23
connective tissue
8
spleen
4
embryo
Project
206
AMP
18
HPAP
Genome assembly (visualization)
174
hg19
156
GRCh38
Lab
182
AMP-T2D consortium
24
Kyle Gaulton, UCSD
18
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 2 more…
primary cell
pancreatic alpha cell
15
4
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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