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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
190
DNA binding
10
DNA accessibility
DNA methylation
1
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
34
narrow histone mark
29
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
200
bam
170
bed narrowPeak
170
bigBed narrowPeak
170
bigWig
81
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
201
Homo sapiens
Biosample type
135
tissue
60
cell line
6
primary cell
Organ
52
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
7
limb
7
musculature of body
7
spleen
5
artery
5
epithelium
5
kidney
5
pancreas
1
adipose tissue
1
connective tissue
Project
201
AMP
Genome assembly (visualization)
168
GRCh38
168
hg19
Lab
201
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
lab.title!
Stephen Parker, UMich
month_released!
April, 2019
BIOSAMPLE
ASSAY
201 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 12 more…
cell line
HepG2
45
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic cell
1
See all biosamples
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