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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
43
ChIP-seq
6
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
401
Transcription
43
DNA binding
11
DNA accessibility
DNA methylation
2
3D chromatin structure
Target of assay
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
23
October, 2018
19
August, 2017
12
July, 2019
7
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
444
bam
424
bigWig
401
tsv
40
fastq
14
bed narrowPeak
12
bigBed narrowPeak
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bedpe bed3+
2
hic
1
tagAlign
1
tar
Organism
459
Homo sapiens
Biosample type
450
tissue
9
primary cell
1
in vitro differentiated cells
Organ
742
pancreas
682
liver
599
connective tissue
453
adipose tissue
378
epithelium
320
kidney
286
heart
162
vasculature
159
bone element
158
blood vessel
121
artery
97
brain
72
limb
68
blood
68
bodily fluid
57
eye
57
musculature of body
20
lung
19
nerve
18
embryo
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
460
AMP
Genome assembly (visualization)
429
hg19
423
GRCh38
Lab
460
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
month_released!
February, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
460 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
2
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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