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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
14
ChIP-seq
4
DNase-seq
3
total RNA-seq
2
single cell RNA-seq
Assay category
41
DNA accessibility
14
DNA binding
5
Transcription
Target of assay
20
histone
20
histone modification
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
12
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
48
bed narrowPeak
21
bam
14
bigWig
11
bigBed narrowPeak
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
59
tissue
1
primary cell
Organ
789
pancreas
739
liver
epithelium
327
kidney
260
heart
214
brain
178
connective tissue
122
vasculature
117
blood vessel
81
limb
79
adipose tissue
70
musculature of body
69
blood
69
bodily fluid
61
artery
60
eye
33
embryo
27
nerve
20
lung
19
spleen
18
ureter
13
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
49
GRCh38
14
hg19
Lab
60
AMP-T2D consortium
assay_slims!
DNA methylation
month_released!
February, 2021
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
60 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
36
5
2
1
tibial artery
1
9
2
1
pulmonary artery
2
primary cell
smooth muscle cell of the coronary artery
1
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