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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
61
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
October, 2019
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
Organism
70
Homo sapiens
Biosample type
61
cell line
8
primary cell
1
tissue
Organ
837
pancreas
784
liver
663
connective tissue
484
adipose tissue
419
epithelium
350
kidney
347
heart
283
brain
198
vasculature
193
blood vessel
151
bone element
limb
106
artery
90
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
DNA methylation
month_released!
February, 2023
organ_slims!
limb
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
1
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