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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
618
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
618
DNA binding
200
Transcription
73
DNA accessibility
8
3D chromatin structure
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
152
histone modification
151
histone
125
control
82
recombinant protein
76
broad histone mark
75
narrow histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
76
October, 2019
63
December, 2017
52
November, 2018
50
August, 2017
40
May, 2022
35
August, 2021
34
June, 2019
12
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
1
December, 2018
Available data
793
bam
711
bigWig
533
bed narrowPeak
462
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
905
Homo sapiens
Biosample type
477
tissue
400
cell line
15
in vitro differentiated cells
13
primary cell
Organ
837
pancreas
784
liver
663
connective tissue
484
adipose tissue
419
epithelium
350
kidney
347
heart
283
brain
198
vasculature
193
blood vessel
151
bone element
121
limb
106
artery
90
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
905
AMP
Genome assembly (visualization)
719
hg19
625
GRCh38
Lab
834
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
February, 2023
organ_slims!
pericardium
BIOSAMPLE
ASSAY
905 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
2
20
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
right lobe of liver
10
3
2
1
2
+ See 11 more…
cell line
HepG2
378
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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