Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
416
total RNA-seq
78
ChIP-seq
34
ATAC-seq
6
DNase-seq
5
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
419
Transcription
78
DNA binding
40
DNA accessibility
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
51
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
12
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
March, 2020
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
447
bam
429
bigWig
405
tsv
46
bed narrowPeak
41
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
1
bedpe bed3+
Organism
542
Homo sapiens
Biosample type
536
tissue
6
primary cell
1
in vitro differentiated cells
Organ
879
pancreas
781
liver
674
connective tissue
483
adipose tissue
465
epithelium
376
heart
334
kidney
282
brain
229
vasculature
224
blood vessel
159
bone element
141
artery
121
limb
85
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
22
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
543
AMP
Genome assembly (visualization)
458
hg19
427
GRCh38
Lab
543
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
month_released!
March, 2020
May, 2023
BIOSAMPLE
ASSAY
543 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
381
2
3
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
+ See 5 more…
primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download