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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
13
ATAC-seq
8
total RNA-seq
4
Hi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
39
DNA binding
11
Transcription
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
8
February, 2021
8
February, 2023
8
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bed narrowPeak
65
bigWig
62
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
5
txt
4
bed bed3
Organism
101
Homo sapiens
Biosample type
88
tissue
13
primary cell
Organ
879
pancreas
781
liver
675
connective tissue
484
adipose tissue
465
epithelium
376
heart
348
kidney
282
brain
229
vasculature
224
blood vessel
159
bone element
141
artery
121
limb
85
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
22
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
101
AMP
Genome assembly (visualization)
78
hg19
58
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
month_released!
March, 2020
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
acetabular part of hip bone
1
1
+ See 14 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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