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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
42
total RNA-seq
16
small RNA-seq
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
80
DNA binding
61
Transcription
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
683
February, 2021
406
November, 2017
341
May, 2020
337
May, 2021
315
August, 2021
296
October, 2019
214
June, 2019
208
August, 2017
149
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
80
April, 2019
78
November, 2018
77
July, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
148
bam
138
bigWig
72
bed narrowPeak
66
bigBed narrowPeak
61
tsv
4
bed bed3+
4
hdf5
Organism
157
Homo sapiens
Biosample type
135
tissue
22
primary cell
Organ
72
heart
30
kidney
17
connective tissue
16
brain
12
adipose tissue
9
blood vessel
9
vasculature
8
liver
8
musculature of body
7
epithelium
4
limb
pancreas
3
artery
1
pericardium
Project
157
AMP
Genome assembly (visualization)
137
hg19
131
GRCh38
Lab
157
AMP-T2D consortium
assay_slims!
DNA methylation
organ_slims!
pancreas
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
2
kidney
23
1
heart right ventricle
13
heart
9
2
1
omental fat pad
4
1
+ See 18 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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