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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 296ChIP-seq
  • 89total RNA-seq
  • 5ATAC-seq
  • 5DNase-seq
  • 1FAIRE-seq
Assay category
  • 296DNA binding
  • 89Transcription
  • DNA methylation
  • 11DNA accessibility
Target of assay
  • 199histone modification
  • 198histone
  • 109broad histone mark
  • 88narrow histone mark
  • 50control
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 709February, 2021
  • 406November, 2017
  • 398May, 2021
  • 396August, 2017
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 168July, 2018
  • 159May, 2022
  • 120May, 2019
  • 94December, 2017
  • 81July, 2019
  • 81November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 280bam
  • 279fastq
  • 270bigWig
  • 142bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
Organism
  • 389Homo sapiens
Biosample type
  • 270tissue
  • 68in vitro differentiated cells
  • 58primary cell
Organ
  • 188pancreas
  • 119connective tissue
  • 51adipose tissue
  • 50liver
  • 29epithelium
  • 22musculature of body
Project
  • 396AMP
Genome assembly (visualization)
  • 272hg19
  • 247GRCh38
Lab
  • 396AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
assay_slims!
  • DNA methylation
BIOSAMPLE
ASSAY

396 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans428911
liver48
subcutaneous abdominal adipose tissue36
skeletal muscle tissue22
pancreas14
in vitro differentiated cells
adipocyte671
primary cell
skeletal muscle myoblast152
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
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