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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
13
total RNA-seq
3
small RNA-seq
2
Hi-C
2
STARR-seq
1
whole genome sequencing assay
Assay category
22
DNA binding
16
Transcription
2
3D chromatin structure
DNA methylation
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
November, 2018
50
August, 2017
40
May, 2022
35
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
25
bigWig
17
bed narrowPeak
16
tsv
11
bam
4
bed bed3+
4
tagAlign
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
43
Homo sapiens
Biosample type
31
cell line
7
tissue
5
primary cell
Organ
137
kidney
107
heart
43
liver
22
connective tissue
16
brain
15
blood vessel
15
vasculature
13
adipose tissue
13
epithelium
8
embryo
8
musculature of body
8
pancreas
5
artery
4
limb
1
pericardium
Project
43
AMP
Genome assembly (visualization)
26
hg19
10
GRCh38
Lab
31
Bing Ren, UCSD
12
AMP-T2D consortium
assay_slims!
DNA methylation
month_released!
February, 2023
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
STARR-seq
whole genome sequencing assay
cell line
HepG2
18
9
1
2
1
tissue
right lobe of liver
2
2
liver
2
1
primary cell
hepatocyte
4
endothelial cell of hepatic sinusoid
1
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