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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
54
DNA binding
11
DNA accessibility
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
709
February, 2021
398
May, 2021
389
August, 2017
341
May, 2020
340
November, 2017
318
August, 2021
307
October, 2019
218
June, 2019
204
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
65
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
65
fastq
64
bam
58
bed narrowPeak
58
bigBed narrowPeak
58
bigWig
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
66
Homo sapiens
Biosample type
44
cell line
21
tissue
1
primary cell
Organ
36
liver
15
blood
15
bodily fluid
7
spleen
4
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
66
AMP
Genome assembly (visualization)
58
hg19
57
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
snATAC-seq
cell line
HepG2
29
GM12878
15
tissue
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
islet of Langerhans
1
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primary cell
pancreatic cell
1
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