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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
9
DNase-seq
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
95
DNA binding
10
DNA accessibility
DNA methylation
6
Transcription
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
111
fastq
110
bam
99
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
5
tsv
1
csv
Organism
111
Homo sapiens
Biosample type
83
cell line
27
tissue
1
primary cell
Organ
57
liver
33
blood
33
bodily fluid
14
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
111
AMP
Genome assembly (visualization)
98
GRCh38
97
hg19
Lab
111
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
October, 2019
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
5
GM12878
33
tissue
spleen
13
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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