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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
65
total RNA-seq
37
single cell RNA-seq
22
snATAC-seq
17
small RNA-seq
8
Hi-C
1
FAIRE-seq
Assay category
119
Transcription
106
DNA accessibility
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
701
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
284
October, 2019
205
February, 2023
189
August, 2021
168
July, 2018
159
May, 2022
137
June, 2019
115
May, 2019
94
December, 2017
81
November, 2018
76
October, 2018
74
July, 2019
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
93
zippedFastqFolder
90
bam
90
bigWig
59
tsv
44
bed narrowPeak
24
fastq
7
txt
5
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
233
Homo sapiens
Biosample type
122
tissue
111
primary cell
Organ
67
pancreas
48
liver
46
epithelium
17
connective tissue
16
brain
15
heart
12
adipose tissue
10
musculature of body
9
blood vessel
9
vasculature
kidney
4
limb
3
artery
1
pericardium
Project
140
AMP
93
HPAP
Genome assembly (visualization)
108
hg19
65
GRCh38
Lab
93
Klaus Kaestner, Upenn
76
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_slims!
DNA methylation
organ_slims!
kidney
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
Hi-C
FAIRE-seq
tissue
liver
20
22
1
islet of Langerhans
18
6
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 17 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 14 more…
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