Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 44total RNA-seq
  • 18small RNA-seq
  • 8Hi-C
  • 6ATAC-seq
  • 3single cell RNA-seq
  • 2FAIRE-seq
Assay category
  • 65Transcription
  • DNA methylation
  • 83D chromatin structure
  • 8DNA accessibility
Target of assay
  • 3control
Date released
  • 709February, 2021
  • 406November, 2017
  • 398May, 2021
  • 396August, 2017
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 168July, 2018
  • 159May, 2022
  • 120May, 2019
  • 94December, 2017
  • 81July, 2019
  • 81November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 77bigWig
  • 73bam
  • 65tsv
  • 7bed narrowPeak
  • 4bed bed3+
  • 4hdf5
  • 2bigBed narrowPeak
Organism
  • 81Homo sapiens
Biosample type
  • 59tissue
  • 22primary cell
Organ
  • 17connective tissue
  • 16brain
  • 15heart
  • 12adipose tissue
  • 9blood vessel
  • 9vasculature
  • 8liver
  • 8musculature of body
  • 7epithelium
  • 7kidney
  • 4limb
  • 4pancreas
  • 3artery
  • 1pericardium
Project
  • 81AMP
Genome assembly (visualization)
  • 76hg19
  • 71GRCh38
Lab
  • 81AMP-T2D consortium
assay_slims!
  • DNA methylation
BIOSAMPLE
ASSAY

81 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad41
subcutaneous adipose tissue41
body of pancreas22
gastrocnemius medialis4
heart left ventricle22
primary cell
cerebellar granule cell2
mesenchymal stem cell of adipose11
skeletal muscle satellite cell11
Purkinje cell1
astrocyte of the cerebellum1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego