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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
6
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
4
Hi-C
2
ATAC-seq
2
pCHi-C
1
FAIRE-seq
Assay category
85
DNA binding
12
Transcription
9
DNA accessibility
4
3D chromatin structure
DNA methylation
Target of assay
67
histone
67
histone modification
45
broad histone mark
22
narrow histone mark
16
control
2
RNA binding protein
2
transcription factor
Date released
47
October, 2019
45
May, 2019
6
August, 2021
5
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
Available data
98
bam
80
bigWig
73
bed narrowPeak
71
bigBed narrowPeak
14
tsv
8
bed broadPeak
8
bigBed broadPeak
7
bed bed3+
3
hic
2
bedpe bed3+
1
hdf5
1
tar
Organism
112
Homo sapiens
Biosample type
88
tissue
24
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
heart
350
kidney
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
82
hg19
76
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA methylation
organ_slims!
brain
heart
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
FAIRE-seq
tissue
tibial artery
23
2
1
1
aorta
13
4
1
1
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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