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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
3
pCHi-C
2
ATAC-seq
1
FAIRE-seq
Assay category
88
DNA binding
12
Transcription
10
DNA accessibility
5
3D chromatin structure
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
45
May, 2019
6
August, 2021
6
July, 2019
6
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
Available data
102
bam
85
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
15
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
118
Homo sapiens
Biosample type
89
tissue
29
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
87
hg19
79
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA methylation
organ_slims!
heart
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
FAIRE-seq
tissue
tibial artery
23
2
1
1
aorta
13
4
1
1
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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