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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
148
DNA binding
36
DNA accessibility
24
Transcription
2
3D chromatin structure
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
29
June, 2019
15
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
181
bam
160
bigWig
141
bed narrowPeak
73
tagAlign
68
bigBed narrowPeak
42
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
212
Homo sapiens
Biosample type
194
tissue
18
primary cell
Organ
815
pancreas
742
liver
connective tissue
465
adipose tissue
427
epithelium
335
kidney
326
heart
214
brain
188
vasculature
183
blood vessel
159
bone element
127
artery
87
limb
70
musculature of body
69
blood
69
bodily fluid
60
eye
33
embryo
27
nerve
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
212
AMP
Genome assembly (visualization)
155
GRCh38
135
hg19
Lab
212
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
organ_slims!
connective tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
212 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
brain
7
14
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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