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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 129ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 201Transcription
  • 129DNA binding
  • 123DNA accessibility
  • DNA methylation
  • 83D chromatin structure
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 52February, 2023
  • 39May, 2022
  • 35October, 2019
  • 33April, 2018
  • 33July, 2018
  • 29August, 2017
  • 26February, 2021
  • 26May, 2021
  • 20June, 2019
  • 19December, 2017
  • 19September, 2020
  • 16November, 2019
  • 7August, 2020
  • 7July, 2019
  • 6August, 2021
  • 6December, 2019
  • 6March, 2020
  • 6November, 2017
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 301bigWig
  • 251fastq
  • 151bed narrowPeak
  • 150tsv
  • 76bigBed narrowPeak
  • 39zippedFastqFolder
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 470Homo sapiens
Biosample type
  • 353primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 893pancreas
  • 784liver
  • 677connective tissue
  • 485adipose tissue
  • 471epithelium
  • 383heart
  • 350kidney
  • 284brain
  • 233vasculature
  • 228blood vessel
  • 159bone element
  • 141artery
  • 121limb
  • 90musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 23spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 362AMP
  • 105HPAP
  • 4T1D
Genome assembly (visualization)
  • 305hg19
  • 294GRCh38
Lab
  • 360AMP-T2D consortium
  • 105Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 90inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
assay_slims!
  • DNA methylation
BIOSAMPLE
ASSAY

471 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell521335121
pancreatic beta cell211323121
pancreatic acinar cell489121
pancreatic ductal cell413410
endothelial cell of umbilical vein17221
epithelial cell of proximal tubule1101
pancreatic delta cell11
hepatocyte541
pancreatic polypeptide-secreting cell9
kidney epithelial cell151
brain microvascular endothelial cell311
choroid plexus epithelial cell31
kidney tubule cell13
retinal pigment epithelial cell31
kidney glomerular epithelial cell12
endothelial cell2
enteroendocrine cell2
glomerular endothelial cell11
glomerular visceral epithelial cell2
renal cortical epithelial cell11
Liver fetal (hepatocyte)1
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
cell line
EndoC_BH13315191621
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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