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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
29
ATAC-seq
24
DNase-seq
24
total RNA-seq
4
pCHi-C
Assay category
53
DNA accessibility
40
DNA binding
24
Transcription
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
63
October, 2019
31
February, 2023
25
June, 2019
2
February, 2020
Available data
78
bed narrowPeak
67
bam
55
bigWig
50
bigBed narrowPeak
24
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
10
tsv
Organism
121
Homo sapiens
Biosample type
117
tissue
4
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
82
hg19
55
GRCh38
Lab
121
AMP-T2D consortium
assay_slims!
DNA methylation
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
pCHi-C
tissue
tibial nerve
35
1
2
5
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
+ See 2 more…
primary cell
retinal pigment epithelial cell
3
1
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