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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
26
ChIP-seq
19
total RNA-seq
5
DNase-seq
5
pCHi-C
Assay category
35
DNA accessibility
26
DNA binding
19
Transcription
DNA methylation
Target of assay
10
histone
10
histone modification
9
control
7
transcription factor
6
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
23
October, 2019
7
December, 2018
7
January, 2019
7
June, 2019
7
November, 2018
1
February, 2020
1
March, 2020
1
October, 2017
Available data
48
bed narrowPeak
30
bam
22
fastq
21
bigWig
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
tagAlign
Organism
85
Homo sapiens
Biosample type
81
tissue
4
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
48
hg19
21
GRCh38
Lab
85
AMP-T2D consortium
assay_slims!
DNA methylation
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
spleen
1
20
1
1
islet of Langerhans
2
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
pituitary gland
1
primary cell
retinal pigment epithelial cell
3
1
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