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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
Assay category
315
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
226
November, 2017
44
November, 2018
30
December, 2017
11
August, 2021
4
August, 2017
Available data
310
bigWig
306
bed narrowPeak
304
fastq
303
bam
291
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
3
tar
2
bed bed3+
Organism
315
Homo sapiens
Biosample type
277
cell line
37
tissue
1
in vitro differentiated cells
Organ
315
liver
41
blood
41
bodily fluid
38
connective tissue
19
pancreas
17
adipose tissue
17
heart
10
kidney
9
vasculature
8
blood vessel
8
epithelium
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
315
AMP
Genome assembly (visualization)
306
hg19
265
GRCh38
Lab
304
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
25
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA methylation
organ_slims!
large intestine
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ChIP-seq
cell line
HepG2
277
tissue
liver
35
right lobe of liver
2
in vitro differentiated cells
hepatocyte
1
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