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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1864ChIP-seq
  • 531ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1whole genome sequencing assay
Assay category
  • 1864DNA binding
  • 831DNA accessibility
  • DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • 337control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 300August, 2017
  • 288October, 2019
  • 218June, 2019
  • 216May, 2021
  • 196May, 2020
  • 133August, 2021
  • 120May, 2019
  • 110February, 2023
  • 99May, 2022
  • 94December, 2017
  • 80April, 2019
  • 80November, 2018
  • 74October, 2018
  • 60February, 2021
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 32July, 2019
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 2032bam
  • 1815bigWig
  • 1811bed narrowPeak
  • 1036bigBed narrowPeak
  • 964fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 116tsv
  • 64xls
  • 60zippedFastqFolder
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2872Homo sapiens
Biosample type
  • 1414tissue
  • 656primary cell
  • 538cell line
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 594liver
  • 396pancreas
  • 267epithelium
  • 263brain
  • 222kidney
  • 221heart
  • 201connective tissue
  • 168vasculature
  • 163blood vessel
  • 118limb
  • 85artery
  • 84adipose tissue
  • 82musculature of body
  • 69blood
  • 69bodily fluid
  • 42nerve
  • 41eye
  • 23embryo
  • 23spleen
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2578AMP
  • 184T1D
  • 100HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1856hg19
  • 1774GRCh38
  • 5hg18
Lab
  • 2313AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 100Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 125inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_slims!
  • DNA methylation
BIOSAMPLE
ASSAY

2872 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
total RNA-seq
pCHi-C
Hi-C
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
whole genome sequencing assay
tissue
liver14520211
islet of Langerhans716817431
kidney277513611
body of pancreas3544
coronary artery5362
primary cell
monocyte851521
pancreatic alpha cell13351
Langerhans cell48
CD8-positive, alpha-beta T cell33221
pancreatic beta cell13231
cell line
HepG237815221
GM12878601
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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