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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
Assay category
141
DNA binding
Target of assay
310
histone
310
histone modification
169
narrow histone mark
141
broad histone mark
68
control
9
transcription factor
Date released
45
August, 2017
44
May, 2021
35
November, 2017
10
October, 2017
7
August, 2021
Available data
412
bigWig
406
bed narrowPeak
363
bam
234
bigBed narrowPeak
141
tagAlign
103
fastq
30
bed broadPeak
10
bigBed broadPeak
7
bed bed3+
Organism
137
Homo sapiens
Biosample type
76
tissue
51
primary cell
14
in vitro differentiated cells
Organ
45
brain
12
connective tissue
12
liver
8
musculature of body
8
pancreas
4
adipose tissue
1
epithelium
Project
97
AMP
44
T1D
Genome assembly (visualization)
97
GRCh38
79
hg19
Lab
97
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA sequencing
Transcription
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
tissue
liver
11
brain
10
caudate nucleus
8
layer of hippocampus
8
skeletal muscle tissue
8
+ See 6 more…
primary cell
monocyte
44
skeletal muscle myoblast
6
hepatocyte
1
in vitro differentiated cells
adipocyte
8
neural progenitor cell
6
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