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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
7
ATAC-seq
6
WGBS
3
Hi-C
Assay category
Transcription
34
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
33
February, 2021
7
August, 2020
3
October, 2022
September, 2020
Available data
zippedFastqFolder
40
fastq
7
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
43
Homo sapiens
Biosample type
43
primary cell
Organ
16
epithelium
16
pancreas
Project
43
HPAP
Genome assembly (visualization)
7
GRCh38
3
hg19
Lab
2436
AMP-T2D consortium
228
Kyle Gaulton, UCSD
82
Katalin Susztak, Upenn
43
Klaus Kaestner, Upenn
40
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_slims!
DNA sequencing
Transcription
files.file_type!
zippedFastqFolder
month_released!
September, 2020
BIOSAMPLE
ASSAY
43 results
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snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
27
pancreatic alpha cell
5
6
1
pancreatic beta cell
2
1
pancreatic acinar cell
1
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