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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
7
WGBS
3
ATAC-seq
1
FAIRE-seq
Assay category
70
DNA binding
Transcription
13
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
258
October, 2019
217
May, 2021
216
June, 2019
151
May, 2020
140
May, 2022
138
August, 2021
138
February, 2021
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
February, 2023
74
October, 2018
49
March, 2020
46
September, 2018
42
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
90
fastq
87
bam
83
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
61
cell line
26
tissue
3
primary cell
Organ
53
liver
15
blood
15
bodily fluid
10
pancreas
9
spleen
3
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
87
AMP
3
HPAP
Genome assembly (visualization)
82
GRCh38
71
hg19
Lab
87
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA sequencing
Transcription
organ_slims!
artery
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
1
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