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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
539
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
Assay category
539
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
DNA sequencing
Target of assay
326
transcription factor
108
control
102
histone modification
101
histone
81
recombinant protein
59
narrow histone mark
56
RNA binding protein
42
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
305
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
33
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
668
bam
609
bigWig
451
fastq
429
bed narrowPeak
346
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
Organism
773
Homo sapiens
Biosample type
385
cell line
360
tissue
15
in vitro differentiated cells
13
primary cell
Organ
773
liver
700
pancreas
665
connective tissue
479
adipose tissue
390
heart
342
epithelium
306
kidney
279
brain
231
vasculature
225
blood vessel
158
bone element
141
artery
118
limb
90
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
773
AMP
Genome assembly (visualization)
610
hg19
526
GRCh38
Lab
704
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent control run_type
assay_slims!
DNA sequencing
assay_title!
Hi-C
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
773 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
cell line
HepG2
365
14
1
1
2
2
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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