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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
STARR-seq
3
Hi-C
1
ATAC-seq
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
30
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
Organism
32
Homo sapiens
Biosample type
28
cell line
4
tissue
Organ
28
liver
4
pancreas
Project
32
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3647
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
32
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_slims!
DNA sequencing
assay_title!
STARR-seq
files.file_type!
bigBed bedMethyl
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
cell line
HepG2
18
9
1
tissue
islet of Langerhans
1
2
1
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