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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
WGBS
Assay category
44
DNA accessibility
17
DNA binding
7
Transcription
4
3D chromatin structure
Target of assay
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
26
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
May, 2019
Available data
65
bam
44
bed narrowPeak
42
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
Organism
72
Homo sapiens
Biosample type
72
tissue
Organ
744
pancreas
683
liver
596
connective tissue
453
adipose tissue
384
epithelium
324
kidney
288
heart
163
vasculature
159
bone element
158
blood vessel
121
artery
99
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA sequencing
assay_title!
WGBS
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
histone
BIOSAMPLE
ASSAY
72 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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