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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
174
single cell RNA-seq
130
total RNA-seq
87
RNA microarray
28
snATAC-seq
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
304
Transcription
225
DNA accessibility
185
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
95
February, 2023
93
February, 2021
52
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
11
March, 2020
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
April, 2019
1
August, 2022
1
May, 2021
1
November, 2019
Available data
bam
1772
bigWig
1056
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
843
Homo sapiens
Biosample type
845
tissue
463
primary cell
98
in vitro differentiated cells
72
cell line
3
stem cell
Organ
201
kidney
178
heart
92
bone element
75
pancreas
72
liver
49
eye
48
connective tissue
47
adipose tissue
45
blood vessel
45
vasculature
39
artery
37
brain
37
musculature of body
19
lung
15
epithelium
8
limb
8
skeleton
4
gonad
4
ovary
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
751
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
107
hg19
Lab
519
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
27
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
85
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_slims!
DNA sequencing
assay_title!
pCHi-C
shRNA RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
845 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
41
26
7
3
1
4
bone element
84
liver
20
23
1
20
1
1
3
left cardiac atrium
40
18
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