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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
247
total RNA-seq
161
ATAC-seq
151
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
400
Transcription
247
DNA binding
228
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
187
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
47
February, 2021
47
June, 2019
46
August, 2017
43
April, 2018
31
October, 2019
28
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
576
bam
393
fastq
295
bed narrowPeak
267
tsv
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
902
Homo sapiens
Biosample type
2499
tissue
902
primary cell
572
cell line
352
in vitro differentiated cells
5
stem cell
Organ
305
epithelium
254
pancreas
34
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
523
AMP
190
HPAP
188
T1D
1
ITG
Genome assembly (visualization)
617
hg19
533
GRCh38
Lab
491
AMP-T2D consortium
220
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA sequencing
assay_title!
pCHi-C
month_released!
May, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
902 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
pancreatic alpha cell
7
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
7
21
10
12
1
exocrine cell
39
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