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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
237
bam
216
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
23
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
265
tissue
15
primary cell
Organ
847
pancreas
640
connective tissue
474
adipose tissue
451
liver
445
epithelium
283
heart
280
brain
280
kidney
221
vasculature
216
blood vessel
159
bone element
134
artery
122
limb
95
musculature of body
60
eye
43
nerve
34
embryo
22
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
211
GRCh38
158
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA sequencing
assay_title!
single cell RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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