Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
498
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
Assay category
498
DNA binding
190
Transcription
38
DNA accessibility
7
DNA methylation
4
3D chromatin structure
DNA sequencing
Target of assay
389
transcription factor
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
65
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
29
August, 2021
28
December, 2018
20
January, 2019
8
January, 2021
7
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
661
bigWig
631
bam
495
bed narrowPeak
442
fastq
412
bigBed narrowPeak
171
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
Organism
742
Homo sapiens
Biosample type
395
cell line
312
tissue
21
primary cell
14
in vitro differentiated cells
Organ
891
pancreas
679
liver
646
connective tissue
494
epithelium
464
adipose tissue
372
heart
341
kidney
251
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
88
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
734
AMP
8
T1D
Genome assembly (visualization)
663
hg19
581
GRCh38
Lab
668
AMP-T2D consortium
40
Karen Mohlke, UNC
26
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA sequencing
assay_title!
small RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
742 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
cell line
HepG2
318
14
1
1
2
2
2
GM12878
54
1
tissue
liver
102
167
20
2
3
1
1
1
1
right lobe of liver
7
3
1
2
1
primary cell
hepatocyte
3
5
1
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
14
Download