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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
361
ChIP-seq
Assay category
361
DNA binding
Target of assay
685
histone modification
684
histone
488
transcription factor
361
narrow histone mark
322
broad histone mark
290
control
94
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
130
October, 2019
66
August, 2017
35
November, 2017
27
May, 2019
27
May, 2020
16
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
8
April, 2019
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
290
bigWig
287
bed narrowPeak
280
bam
127
tagAlign
103
bigBed narrowPeak
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
359
Homo sapiens
Biosample type
286
tissue
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
heart
29
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
357
AMP
4
T1D
Genome assembly (visualization)
276
hg19
271
GRCh38
Lab
349
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
assay_slims!
DNA sequencing
assay_title!
snATAC-seq
biosample_type!
primary cell
organ_slims!
heart
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
layer of hippocampus
8
+ See 93 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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