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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
1017
histone modification
1016
histone
514
narrow histone mark
broad histone mark
450
transcription factor
337
control
93
RNA binding protein
73
recombinant protein
29
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
29
bam
29
bed narrowPeak
29
bigWig
29
fastq
27
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
29
Homo sapiens
Biosample type
23
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
18
liver
8
blood
8
bodily fluid
2
connective tissue
1
epithelium
Project
29
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA sequencing
assay_title!
snATAC-seq
month_released!
November, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
cell line
HepG2
15
GM12878
8
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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