Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
174
single cell RNA-seq
130
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
185
DNA binding
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
101
August, 2017
40
May, 2024
23
October, 2019
13
November, 2017
7
October, 2017
1
April, 2019
Available data
bam
615
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
185
Homo sapiens
Biosample type
185
tissue
52
in vitro differentiated cells
37
primary cell
19
cell line
Organ
41
heart
37
connective tissue
36
adipose tissue
23
liver
22
brain
22
musculature of body
20
pancreas
4
gonad
4
ovary
2
eye
1
limb
1
lymph node
Project
185
AMP
Genome assembly (visualization)
42
GRCh38
24
hg19
Lab
145
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
missing controlled_by
assay_slims!
DNA sequencing
assay_title!
RRBS
files.file_type!
bam
BIOSAMPLE
ASSAY
185 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
islet of Langerhans
41
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
liver
23
skeletal muscle tissue
22
+ See 9 more…
See all biosamples
Download