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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
141
Transcription
88
DNA binding
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
85
May, 2021
47
September, 2023
40
September, 2020
33
May, 2022
12
February, 2021
9
April, 2020
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
52
zippedFastqFolder
34
fastq
Organism
229
Homo sapiens
Biosample type
169
primary cell
58
tissue
2
cell line
Organ
47
kidney
9
lung
4
pancreas
2
epithelium
Project
AMP
88
T1D
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
85
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA sequencing
award.project!
AMP
BIOSAMPLE
ASSAY
229 results
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single cell RNA-seq
ChIP-seq
primary cell
Langerhans cell
85
monocyte
84
tissue
kidney
47
lung
9
islet of Langerhans
2
cell line
EndoC_BH1
2
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