Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1652
ChIP-seq
1046
total RNA-seq
498
ATAC-seq
365
single cell RNA-seq
167
DNase-seq
86
RNA microarray
84
snATAC-seq
68
WGBS
52
pCHi-C
29
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
68
DNA methylation
Date released
41
May, 2022
11
July, 2019
7
November, 2018
6
February, 2021
3
August, 2017
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
14
fastq
6
tsv
Organism
68
Homo sapiens
Biosample type
47
primary cell
20
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
limb
1
musculature of body
Project
47
HPAP
21
AMP
Genome assembly (visualization)
14
GRCh38
Lab
47
Klaus Kaestner, Upenn
21
AMP-T2D consortium
assay_slims!
DNA sequencing
assay_title!
GRO-seq
organ_slims!
connective tissue
limb
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
liver
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 5 more…
cell line
HepG2
1
See all biosamples
Download